IGVFFI5840WEBP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5071AEIH(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP012_G8_P060_L008_I1

md5sum

882099c8f6130abc1658e9206531f8a8

Content MD5sum

53091564db32f33591ed89b1141251d0

File Size

365 MB

Submitted File Name

Multiome_RNA_RP012_G8_L008_P060_S40_L008_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

64915974

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9167CXIN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples