IGVFFI5826VJQF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3166POHS(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X025_G2_P023_L003_R3

md5sum

c5519a7a026f0cadec019cb6d2e9c340

Content MD5sum

eab9fb8b007b18cac73f4d2764ae81c8

File Size

5.5 GB

Submitted File Name

Multiome_ATAC_X025_G2_L002_P023_S34_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

165164926

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2452FKKK

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 87 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples