IGVFFI5821XQQM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4661FUFW(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X018_G1_P017_L001_R1

md5sum

e1234913c2f6b6a9801c3f0e7d7d3018

Content MD5sum

d94aca37ff0d2d2dc9ec04983d699ad7

File Size

12 GB

Submitted File Name

Multiome_ATAC_X018_G1_L001_P017_S3_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7NNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

396378081

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3747OUVO

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 73 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples