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INDEXED
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SequenceFile
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IGVFFI5818XXKB
IGVFFI5818XXKB
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS0631LOBZ
(single-nucleus RNA sequencing assay (10x multiome))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X007_G7_P006_L002_I1
md5sum
7db55f4f19248af8a77032d814e89c13
Content MD5sum
d32d1832485de4ec91b686d1734f3c0d
File Size
1.6 GB
Submitted File Name
Multiome_RNA_X007_G7_L007_P006_S17_L002_I1_001.fastq.gz
Checkfiles Version
v20
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
H5THNDSX5
Lane
2
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
I1
Average Read Length
10
Read Count
298524361
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM7838UKZT
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 81 years) putamen tissue; Homo sapiens (male, 90 or above years) cerebellar cortex tissue; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF