IGVFFI5815BLVD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6638LYXU(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP028_G7_P077_L004_I1

md5sum

220cc932a063770dfa40253f1cc0ef07

Content MD5sum

45e5ff4bb1e810e629c45f5a04e97caf

File Size

418 MB

Submitted File Name

Multiome_ATAC_RP028_G7_L007_P077_S25_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

22F3GTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

56932989

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3393RSBM

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; ... and 6 more samples