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INDEXED
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SequenceFile
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IGVFFI5796UGUZ
IGVFFI5796UGUZ
released
validated
Json view
File Set
IGVFDS1570UJMU
(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp12_rna_10x1_NGS2_r2
md5sum
f3846642a097f35f3a551cee7c976ced
Content MD5sum
e44ceef361ce94bf858dda800530875e
File Size
8.0 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/GEX/FASTQ/GEX1_S1_L002_R2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
225LWLLT3
Lane
2
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R2
Average Read Length
90
Read Count
190346607
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM3641EGVH
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI7332UUZE
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
158 MB
validated
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI4613CIJO
yaml
seqspec
seqspec of IGVFFI5594WHXH, IGVFFI2703RDLU, IGVFFI6249BQWN, IGVFFI5796UGUZ
Ansuman Satpathy, Stanford
1.4 KB
validated
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford