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SequenceFile
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IGVFFI5790FOTK
IGVFFI5790FOTK
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS0177MBCS
(single-nucleus RNA sequencing assay (10x multiome))
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X051_G2_P070_L005_I2
md5sum
41834bdb6e4c8dd79457ce89fd9729aa
Content MD5sum
8d343dce7a498d76be934104dc97b4c7
File Size
784 MB
Submitted File Name
Multiome_RNA_X051_G2_L002_P070_S30_L005_I2_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
19RTCA4LE
Lane
5
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I2
Average Read Length
10
Read Count
108996985
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM7066LYTG
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 80 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 8 more samples