IGVFFI5784ACZW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5893RSDQ(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X015_G1_P014_L002_R1

md5sum

316d5841ae0fc8dbe949afcbf1509318

Content MD5sum

69b5e193b430be0e38470ed26fa045a5

File Size

5.5 GB

Submitted File Name

Multiome_RNA_X015_G1_L001_P014_S21_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

264146936

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3424EEIT

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) posterior cingulate gyrus tissue; Homo sapiens (male, 90 or above years) substantia nigra tissue; ... and 10 more samples