IGVFFI5783LSHA

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5765IJZT(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X046_G7_P047_L003_R3

md5sum

d7d92b529ced1671f77aa2331e0c230a

Content MD5sum

a45299196634f4c2b8ecae22b530dfa2

File Size

9.2 GB

Submitted File Name

Multiome_ATAC_X046_G7_L007_P047_S19_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

293923424

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5223WGIQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 78 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 53 years) middle temporal gyrus tissue; ... and 10 more samples