IGVFFI5777RHRZ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5571QAYO(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X042_G3_P043_L007_R1

md5sum

a9eab8a017029c47216a8a8bfda1040d

Content MD5sum

652f433486d44e4b403403cd35400703

File Size

2.1 GB

Submitted File Name

Multiome_ATAC_X042_G3_L003_P043_S21_L007_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

67923416

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3739CWYU

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples