IGVFFI5750RQVL

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9935CBEP(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X049_G8_P065_L005_R3

md5sum

7deabf201c76e88c667d8811b0dbe9db

Content MD5sum

463b8fe4412880d6d67bc839491944fc

File Size

2.0 GB

Submitted File Name

Multiome_ATAC_X049_G8_L008_P065_S30_L005_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

64187122

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5463OPEG

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (male, 63 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; ... and 8 more samples