IGVFFI5731FATM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7756RFRK(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X054_G8_P071_L007_R3

md5sum

a91faeb5ae77718d8b2586b792d729bf

Content MD5sum

a70bbf024d72975e46e6ef5c71b8c16b

File Size

13 GB

Submitted File Name

Multiome_ATAC_X054_G8_L008_P071_S60_L007_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

193801091

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9204TXPW

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) putamen tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 8 more samples