IGVFFI5702OMNJ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9162IPID(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X043_G2_P043_L005_I1

md5sum

8676da2c87da47a651c242cd44ec7177

Content MD5sum

520d03adb2fe623e5677fc399b92e850

File Size

474 MB

Submitted File Name

Multiome_ATAC_X043_G2_L002_P043_S28_L005_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

63905333

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8592YDYJ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease; ... and 10 more samples