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IGVFFI5697NKKJ
IGVFFI5697NKKJ
preview
validated
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS6874YIXA
(prime editing Variant-EFFECTS)
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:Jurkat_Stim-IL2RA_prom-NegControl-PCRRep4_I2
md5sum
61dd55490a7232db1d2f926849bd0554
Content MD5sum
23f4b3093a2de83bc139c89d03b61972
File Size
2.8 KB
Submitted File Name
Jurkat_Stim-IL2RA_prom-BioRep2-FFRep3-PCRRep4-BinNeg_S196_I2_001.fastq.gz
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Illumina Read Type
I2
Index
ACAGGTAT:CCTG
Average Read Length
4
Read Count
53
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM7816WZNZ
InVitroSystem
Jurkat
Jurkat cell line, male, Homo sapiens treated with 100 ng/mL phorbol 13-acetate 12-myristate for 24 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 24 hours, modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2)
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI9903UNGI
tsv
variant effects
variant effects
Jesse Engreitz, Stanford
5.9 KB
validated
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford