IGVFFI5696TVWE

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI5696TVWE/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI5696TVWE",
10    "assay_titles": [
11        "lentiMPRA"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG011966/",
16        "component": "functional characterization"
17    },
18    "content_md5sum": "fa858a1b7b93006fa1b1071819f13409",
19    "content_type": "reads",
20    "controlled_access": false,
21    "creation_timestamp": "2024-10-15T08:47:25.836945+00:00",
22    "description": "UMI reads HEK293T DNA count data of replicate 1",
23    "externally_hosted": false,
24    "file_format": "fastq",
25    "file_set": {
26        "@id": "/auxiliary-sets/IGVFDS6433JKUR/",
27        "@type": [
28            "AuxiliarySet",
29            "FileSet",
30            "Item"
31        ],
32        "accession": "IGVFDS6433JKUR",
33        "file_set_type": "quantification DNA barcode sequencing",
34        "status": "released",
35        "summary": "quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide"
36    },
37    "file_size": 851471872,
38    "gene_list_for": [],
39    "href": "/sequence-files/IGVFFI5696TVWE/@@download/IGVFFI5696TVWE.fastq.gz",
40    "illumina_read_type": "R2",
41    "input_file_for": [
42        "/tabular-files/IGVFFI6179OMKY/",
43        "/tabular-files/IGVFFI3395FJLK/",
44        "/tabular-files/IGVFFI3765GJLD/",
45        "/tabular-files/IGVFFI6942SEEH/",
46        "/tabular-files/IGVFFI9432KCNV/",
47        "/tabular-files/IGVFFI2451LQDL/"
48    ],
49    "integrated_in": [],
50    "lab": {
51        "@id": "/labs/nadav-ahituv/",
52        "title": "Nadav Ahituv, UCSF"
53    },
54    "loci_list_for": [],
55    "maximum_read_length": 16,
56    "md5sum": "6172f30aad860bac22a4e7d5d8b46113",
57    "mean_read_length": 16,
58    "minimum_read_length": 16,
59    "quality_metrics": [],
60    "read_count": 49543916,
61    "read_names": [
62        "UMI"
63    ],
64    "release_timestamp": "2025-01-30T17:46:54.580550+00:00",
65    "s3_uri": "s3://igvf-files/2024/10/15/bffb4727-e8b2-4aac-92e8-8dad5dff96e9/IGVFFI5696TVWE.fastq.gz",
66    "schema_version": "15",
67    "seqspecs": [
68        "/configuration-files/IGVFFI5900RDDY/"
69    ],
70    "sequencing_kit": "NextSeq 500 High Output v2 Kit",
71    "sequencing_platform": {
72        "@id": "/platform-terms/EFO_0009173/",
73        "status": "released",
74        "term_name": "Illumina NextSeq 500"
75    },
76    "sequencing_run": 3,
77    "status": "released",
78    "submitted_by": {
79        "@id": "/users/3ad3479d-753b-4293-9c09-c0dcabfd0ddb/",
80        "title": "Max Schubach"
81    },
82    "submitted_file_name": "\"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/proximalPromotor/count/HEK293T/run3/293T-DNA-1_S1_R2_001.fastq.gz\"",
83    "submitter_comment": "seqrun3",
84    "summary": "R2 reads from sequencing run 3",
85    "upload_status": "validated",
86    "uuid": "bffb4727-e8b2-4aac-92e8-8dad5dff96e9"
87}