IGVFFI5694NVGT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4476GYTZ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X009_G4_P007_L003_R1

md5sum

d24efb73d6f730bccce22f3528e91d2b

Content MD5sum

813e8991b790b7a9501afdfb39951449

File Size

9.9 GB

Submitted File Name

Multiome_ATAC_X009_G4_L004_P007_S24_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5THNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

185327557

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3150FIJD

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 10 more samples