IGVFFI5689NHNU

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3141FRLK(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X042_G4_P043_L008_R1

md5sum

664b731b05011e6840a9ea4543d8ee2d

Content MD5sum

acec5a5d4a47b38ca9c3d7ca3bdabb91

File Size

412 MB

Submitted File Name

Multiome_ATAC_X042_G4_L004_P043_S22_L008_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

13158097

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6255JGZM

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples