IGVFFI5687NOXO

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6950EWLX(single-nucleus RNA sequencing assay (10x multiome))

Summary

I2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP021_G4_P068_L003_I2

md5sum

e75820dc42722b12fa0ab5e6b2877581

Content MD5sum

24515d23e35eeecdace2b0737d07dfa4

File Size

350 MB

Submitted File Name

Multiome_RNA_RP021_G4_L004_P068_S2_L003_I2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257GYLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

56286838

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6537ROKX

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 88 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 80 years) substantia nigra tissue associated with Parkinson's disease; ... and 14 more samples