IGVFFI5685HZSD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3574OBXA(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X011_G2_P009_L001_R3

md5sum

acc459fd83f68a45c6618267d353c6d5

Content MD5sum

a43452f6b148ff04755c1d8ffe01143c

File Size

7.6 GB

Submitted File Name

Multiome_ATAC_X011_G2_L002_P009_S4_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HJ7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

232266643

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6849SXMF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 81 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples