IGVFFI5673BDPJ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9258PMZG(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X052_G5_P071_L007_R1

md5sum

4be5419495b3d6064b970ef1519944bb

Content MD5sum

0839f632a5a2c8b96ed935edb8e9c969

File Size

15 GB

Submitted File Name

Multiome_ATAC_X052_G5_L005_P071_S41_L007_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

216574654

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3735PHFP

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 70 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease; ... and 8 more samples