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IGVFFI5669BPLY

released
validated
File Set
IGVFDS0877CWMW(single-cell RNA sequencing assay (SHARE-seq))
Summary
R1 reads from sequencing run 245
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2011_R1
bradley-bernstein:SS-LS_245_R1
buenrostro-bernstein:SS-LS_2011_R1
buenrostro-bernstein:SS-LS_245_R1
md5sum
950ae9341a1c6ff57ceccbcbde5ff383
Content MD5sum
cb94d45c9c67358010727ed78c6ddd81
File Size
405 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-136_L2_SS-PKR-130_SS-V1-LEFT-HALF_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
245
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
15349283

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 130)

Files Derived From This File

2 items
tar
comprehensive gene count matrix
unfiltered cell by gene in comprehensive gene count matrix
Jason Buenrostro, Broad
2.6 GB
validated
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
467 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI5669BPLY, IGVFFI8558RDPT
Jason Buenrostro, Broad
1.2 KB
validated