IGVFFI5650FQEX

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3284TIFO(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X015_G2_P013_L001_R1

md5sum

93239610788ae3985b2c5942da7be430

Content MD5sum

d2335f886b86c375b6815a88e25cd17e

File Size

7.6 GB

Submitted File Name

Multiome_ATAC_X015_G2_L002_P013_S8_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

244775344

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7474GXHG

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) posterior cingulate gyrus tissue; Homo sapiens (male, 90 or above years) substantia nigra tissue; ... and 10 more samples