IGVFFI5642HOUI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7362VJGH(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X028_G6_P027_L003_R3

md5sum

1acadcea7d89e837f5551cd474163cb3

Content MD5sum

1b6a52905d2c4e8fb9d7113f11da0725

File Size

5.4 GB

Submitted File Name

Multiome_ATAC_X028_G6_L006_P027_S23_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

172708196

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9719AYTK

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples