IGVFFI5628EGBD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2060SJIY(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X021_G1_P019_L003_R3

md5sum

5f0cb9817ede656a4057c1475c388041

Content MD5sum

773dba69ca1d761eed6351b560db4710

File Size

10 GB

Submitted File Name

Multiome_ATAC_X021_G1_L001_P019_S41_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7NNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

323999868

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7942VHUU

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 90 or above years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples