IGVFFI5627EKSQ

preview
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI5627EKSQ/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI5627EKSQ",
10    "aliases": [
11        "leif-ludwig:measurement230571005C_scRNA_R2_001"
12    ],
13    "assay_titles": [
14        "10x multiome with scMito-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v17",
22    "content_md5sum": "b0b8f0ef9944e9fd23960a3758ba6394",
23    "content_type": "reads",
24    "controlled_access": true,
25    "creation_timestamp": "2025-03-07T04:00:37.427221+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/measurement-sets/IGVFDS7690BMNL/",
30        "@type": [
31            "MeasurementSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS7690BMNL",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0002631/",
38            "term_name": "single-cell RNA sequencing assay"
39        },
40        "controlled_access": true,
41        "data_use_limitation_summaries": [
42            "GRU-PUB"
43        ],
44        "file_set_type": "experimental data",
45        "samples": [
46            {
47                "@id": "/primary-cells/IGVFSM5558TICK/",
48                "@type": [
49                    "PrimaryCell",
50                    "Biosample",
51                    "Sample",
52                    "Item"
53                ],
54                "accession": "IGVFSM5558TICK",
55                "classifications": [
56                    "primary cell"
57                ],
58                "sample_terms": [
59                    {
60                        "@id": "/sample-terms/CL_2000001/",
61                        "status": "released",
62                        "term_name": "peripheral blood mononuclear cell"
63                    }
64                ],
65                "status": "preview",
66                "summary": "Homo sapiens (male, 66 years) peripheral blood mononuclear cell",
67                "taxa": "Homo sapiens"
68            }
69        ],
70        "status": "preview",
71        "summary": "10x multiome with scMito-seq"
72    },
73    "file_size": 2126946733,
74    "flowcell_id": "22Y7YHLT3",
75    "gene_list_for": [],
76    "href": "/sequence-files/IGVFFI5627EKSQ/@@download/IGVFFI5627EKSQ.fastq.gz",
77    "illumina_read_type": "R2",
78    "input_file_for": [],
79    "integrated_in": [],
80    "lab": {
81        "@id": "/labs/leif-ludwig/",
82        "title": "Leif Ludwig, MDC"
83    },
84    "lane": 1,
85    "loci_list_for": [],
86    "maximum_read_length": 90,
87    "md5sum": "2cfd7df998506b63efcffc8def148e22",
88    "mean_read_length": 90,
89    "minimum_read_length": 90,
90    "quality_metrics": [],
91    "read_count": 54992789,
92    "read_names": [
93        "Read 2"
94    ],
95    "s3_uri": "s3://igvf-restricted-files/2025/03/07/d296fa3d-76b7-4c0b-8cf9-ecc597c4d080/IGVFFI5627EKSQ.fastq.gz",
96    "schema_version": "15",
97    "seqspecs": [
98        "/configuration-files/IGVFFI0310FVQS/"
99    ],
100    "sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
101    "sequencing_platform": {
102        "@id": "/platform-terms/EFO_0022841/",
103        "status": "released",
104        "term_name": "Illumina NovaSeq X Plus"
105    },
106    "sequencing_run": 1,
107    "status": "preview",
108    "submitted_by": {
109        "@id": "/users/8164e524-79d5-4407-8a75-c0ea353d28ea/",
110        "title": "Ludwig Lab"
111    },
112    "submitted_file_name": "/data/cephfs-1/scratch/groups/ludwig/A5077/250226_LH00253_0209_B22Y7YHLT3/A5077_hPBMC_230571005C_Multiome-GEX_966_S12_L001_R2_001.fastq.gz",
113    "summary": "R2 reads from sequencing run 1",
114    "upload_status": "validated",
115    "uuid": "d296fa3d-76b7-4c0b-8cf9-ecc597c4d080"
116}