IGVFFI5624JFUN

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8336JFEI(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP012_G1_P059_L005_R1

md5sum

5eca887ce4033a0b3587762e89bcdba4

Content MD5sum

8ead32878c7317b8496f3ab9da2f6cad

File Size

1.5 GB

Submitted File Name

Multiome_ATAC_RP012_G1_L001_P059_S81_L005_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

49239311

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3122KACM

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples