Home

IGVFFI5622EDZO

released
validated
File Set
IGVFDS5893VQJY(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp3_atac_10x1_NGS2_r1
md5sum
2e2a87c073880b152fe2a9afa72ec422
Content MD5sum
63052d4ac9df11fa35600adca73cb8e7
File Size
9.0 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF3_McGinnis/ATAC/FASTQ/ATAC_1-_S1_L002_R1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
222YV7LT3
Lane
2
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
51
Read Count
293989861

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fragments
fragments
Ansuman Satpathy, Stanford
3.1 GB
validation exempted

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI1873DKIW, IGVFFI2745JXTS, IGVFFI5188FQQU, IGVFFI5622EDZO
Ansuman Satpathy, Stanford
1.4 KB
validated

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford