IGVFFI5618QQGN

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8885GAJV(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP007_G5_P055_L004_R1

md5sum

646bb85ea9f748b8f5c5b59a8b506001

Content MD5sum

cd7ac0c2079a054162dc94370781979b

File Size

2.1 GB

Submitted File Name

Multiome_ATAC_RP007_G5_L005_P055_S17_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

69111773

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2276WIKG

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 81 years) cerebellar cortex tissue; ... and 10 more samples