IGVFFI5617WZEU

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3971IMCD(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X009_G3_P007_L003_R3

md5sum

1637168f4042a860c2da8770c9ff03d8

Content MD5sum

201ca0815c974a6c40a2c00a1c7bef19

File Size

8.8 GB

Submitted File Name

Multiome_ATAC_X009_G3_L003_P007_S23_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5THNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

157630950

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6970GFLR

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 10 more samples