IGVFFI5612YARM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8509DVUL(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X018_G8_P017_L001_R1

md5sum

fef86dc01f80d3d2535b191e91f36cb1

Content MD5sum

04eaf482af8ed52cfef328411fe99447

File Size

3.9 GB

Submitted File Name

Multiome_ATAC_X018_G8_L008_P017_S10_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7NNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

124830957

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5218YFIX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 73 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples