IGVFFI5599IVLV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2676KELA(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP005_G2_P053_L001_R1

md5sum

e32f48810ff2aaf813e0c0a1f35f73f6

Content MD5sum

809cb6667013871b72d6c5445c9607c2

File Size

2.0 GB

Submitted File Name

Multiome_ATAC_RP005_G2_L002_P053_S18_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

67644066

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7731BQTB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples