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IGVFFI5596FJTD

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS4940ELQK(CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)
Summary
I2 reads from sequencing run 2
File Format
fastq
Content Type
reads
Aliases
gary-hon:LW272_8_I2
md5sum
4e5d5684c215ecc50d294d52f3457dc1
Content MD5sum
97b8de54e329d7d56de20fe56caaa175
File Size
962 MB
Submitted File Name
/project/GCRB/Hon_lab/shared/data/sequencing_data/2023/2023-10-25-McDermott-NovaSeq.lane8.10X/10X//LW272_S4_L008_I2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles

Sequencing Details

Sequencing Platform
Illumina NextSeq 2000
Sequencing Run
2
Flowcell ID
22FJH2LT3
Lane
8
Illumina Read Type
I2
Average Read Length
10
Read Count
152846412

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW272), female, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library

Files Derived From This File

2 items
hdf5
filtered feature barcode matrix
cell by UMI count in filtered feature barcode matrix
Gary Hon, UT
426 MB
validated
pkl
raw feature barcode matrix
cell by CRISPR guide capture in raw feature barcode matrix
Gary Hon, UT
1.4 GB
validated

Attribution

Award
HG011996
Principal Investigator(s)
Contact P.I.
Gary Hon
Lab
Gary Hon, UT