IGVFFI5593XTXZ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6812JLHX(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP002_G4_P051_L006_R3

md5sum

7a978593da6d119ca62d3859e8079d8e

Content MD5sum

a9e0016829cdd97cde63c7717b14ced4

File Size

97 MB

Submitted File Name

Multiome_ATAC_RP002_G4_L004_P051_S32_L006_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

3077447

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6197WJXN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) putamen tissue; Homo sapiens (male, 82 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples