IGVFFI5590SNIV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6459RETS(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X031_G2_P031_L001_I1

md5sum

941ac6c5ffd8f037d51c6c9efaadbc68

Content MD5sum

a8827eaad00ed407870c4496239f8cf1

File Size

1.8 GB

Submitted File Name

Multiome_ATAC_X031_G2_L002_P031_S8_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

244906988

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3376RRIH

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 80 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples