IGVFFI5579ZSMK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7866JXEW(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X010_G8_P009_L001_R1

md5sum

9c96499444ace9e323f4e9c9e9b188c0

Content MD5sum

18005deee154d428563f6311d3c29093

File Size

4.9 GB

Submitted File Name

Multiome_ATAC_X010_G8_L008_P009_S2_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HJ7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

152390724

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4584XRDP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples