IGVFFI5567ODWB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8662BJYJ(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP010_G8_P060_L008_R1

md5sum

a05df99b4446c6e629756402eb129208

Content MD5sum

120467e026b63cf73c11eca232ca97f7

File Size

1.6 GB

Submitted File Name

Multiome_RNA_RP010_G8_L008_P060_S43_L008_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

82956712

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6509YCTF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; ... and 12 more samples