IGVFFI5563SWDU

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5088UYFV(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X052_G1_P069_L002_R3

md5sum

74ebc3f25237b46e7b82dd3d8f0a745f

Content MD5sum

e70e5c5d10d7f68d47bd49769811c179

File Size

11 GB

Submitted File Name

Multiome_ATAC_X052_G1_L001_P069_S17_L002_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

161827036

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3208SWPO

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 70 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease; ... and 8 more samples