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IGVFFI5562QBAP

released
validated
File Set
IGVFDS8398CKNT(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp13_rna_10x2_NGS2_i2
md5sum
0f6f4ab57096ed43435a1ec5ea81d314
Content MD5sum
af43355556633c8cf60bb24f29f76406
File Size
1.9 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/240425_IGVF13_McGinnis/GEX/FASTQ/igvf13_s2_rna_S2_L002_I2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
22HHHWLT3
Lane
2
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I2
Average Read Length
10
Read Count
359034738

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 48 years) left coronary artery tissue associated with coronary artery disorder; Homo sapiens (female, 73 years) left coronary artery tissue associated with coronary artery disorder; ... and 2 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
126 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI0500KQFG, IGVFFI1429UDGT, IGVFFI5562QBAP, IGVFFI5686HDAC
Ansuman Satpathy, Stanford
1.4 KB
validated