IGVFFI5559EVYB

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI5559EVYB/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI5559EVYB",
    "aliases": [
        "ansuman-satpathy:igvf_mouse_bridge_115_atac_r1"
    ],
    "assay_titles": [
        "10x multiome"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012076/",
        "component": "mapping"
    },
    "content_md5sum": "e71435f3000f8a398d556e616c4f871f",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2024-07-23T04:26:12.370995+00:00",
    "externally_hosted": false,
    "file_format": "fastq",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS1085SCZI/",
        "accession": "IGVFDS1085SCZI",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/tissues/IGVFSM9817DJBX/",
                "accession": "IGVFSM9817DJBX",
                "classifications": [
                    "tissue"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "status": "released",
                        "term_name": "left cerebral cortex"
                    }
                ],
                "status": "released",
                "summary": "left cerebral cortex tissue, male, Mus musculus C57BL/6J (10 weeks)",
                "taxa": "Mus musculus"
            }
        ],
        "status": "released",
        "summary": "single-nucleus ATAC-seq (10x multiome)"
    },
    "file_size": 17192436643,
    "flowcell_id": "HV7LKDSX5",
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI5559EVYB/@@download/IGVFFI5559EVYB.fastq.gz",
    "illumina_read_type": "R1",
    "input_file_for": [
        "/tabular-files/IGVFFI4420KRPZ/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "lane": 1,
    "loci_list_for": [],
    "maximum_read_length": 100,
    "md5sum": "652f1f7644ccf58e41b13f5285cb14b2",
    "mean_read_length": 100,
    "minimum_read_length": 100,
    "quality_metrics": [],
    "read_count": 324794308,
    "read_names": [
        "Read 1"
    ],
    "release_timestamp": "2025-03-07T01:18:56.468008+00:00",
    "s3_uri": "s3://igvf-files/2024/07/23/682417ae-6f95-48fa-b130-b55aa752a435/IGVFFI5559EVYB.fastq.gz",
    "schema_version": "15",
    "seqspecs": [
        "/configuration-files/IGVFFI9024YJBE/"
    ],
    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0008637/",
        "status": "released",
        "term_name": "Illumina NovaSeq 6000"
    },
    "sequencing_run": 1,
    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/oak/stanford/projects/igvf/Projects/230622_IGVF_Bridge_McGinnis/ATAC/ATAC_115_S6_L001_R1_001.fastq.gz",
    "summary": "R1 reads from sequencing run 1",
    "upload_status": "validated",
    "uuid": "682417ae-6f95-48fa-b130-b55aa752a435"
}