IGVFFI5556ZJLG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1460TTLQ(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP029_G2_P078_L008_I1

md5sum

5da5e6e470946070ba8db65d7adba28b

Content MD5sum

1a3cd44f8137b00cb396f1052e019298

File Size

1.4 GB

Submitted File Name

Multiome_RNA_RP029_G2_L002_P078_S66_L008_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19UBCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

179843143

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2738AFKG

MultiplexedSample

posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) posterior cingulate gyrus tissue; ... and 6 more samples