IGVFFI5552CGIO

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2491TQTU(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X053_G7_P071_L006_R1

md5sum

4ded6842e0fb387ff705a65d0d3e3fed

Content MD5sum

0456dcae6e843c3c68caf4f5a19d83c4

File Size

10 GB

Submitted File Name

Multiome_ATAC_X053_G7_L007_P071_S51_L006_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

144152696

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2635PZMY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 73 years) middle temporal gyrus tissue; ... and 8 more samples