IGVFFI5548OTNG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9129KQZH(single-nucleus RNA sequencing assay (10x multiome))

Summary

I2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP012_G1_P060_L008_I2

md5sum

b40c178421e90bf2c8d8352d089cc9e0

Content MD5sum

c7ba7e7ae8e35738fff6d6ae5b391ad6

File Size

396 MB

Submitted File Name

Multiome_RNA_RP012_G1_L001_P060_S33_L008_I2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

61923549

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3122KACM

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples