IGVFFI5545SJLF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7624FKBF(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X046_G8_P047_L003_I1

md5sum

d70459529ca3a2a0188cfde256edb6f6

Content MD5sum

c540464243a585c9817f6a420b265e86

File Size

1.6 GB

Submitted File Name

Multiome_ATAC_X046_G8_L008_P047_S20_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

215601212

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3471DKMI

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 78 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 53 years) middle temporal gyrus tissue; ... and 10 more samples