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INDEXED
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IGVFFI5545CAGM
IGVFFI5545CAGM
released
validated
Json view
File Set
IGVFDS1742BLLN
(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp9_rna_10x3_NGS1_i1
md5sum
5e0b8dfd92dc087f0f33101fc37a5d1a
Content MD5sum
189d2d27cf1dc2bc6d1694a4f4bd9f34
File Size
2.0 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230707_IGVF9_McGinnis/GEX/FASTQ/GEX_3_CMAS_IGVF9_R_S8_L001_I1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JHYLT3
Lane
1
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I1
Average Read Length
10
Read Count
446794345
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM2794HHHZ
MultiplexedSample
B cell
multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI9287XJLK
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
280 MB
validated
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI8683CNBX
yaml
seqspec
seqspec of IGVFFI5545CAGM, IGVFFI9142ODTA, IGVFFI1352MGGZ, IGVFFI6941CWPY
Ansuman Satpathy, Stanford
1.4 KB
validated
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford