IGVFFI5544LFIO

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4263YTZD(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X046_G5_P048_L004_R1

md5sum

790247eb41cca9da0cc9be995989a9e7

Content MD5sum

bd32a56d0fdfa40762a0f81e44ed1393

File Size

6.2 GB

Submitted File Name

Multiome_RNA_X046_G5_L005_P048_S17_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

305697221

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2300MKEN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 78 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 53 years) middle temporal gyrus tissue; ... and 10 more samples