IGVFFI5540ASUX

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3959TIPT(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X042_G1_P043_L006_I1

md5sum

9b6710d0132fa27c64b4281bb20c2d33

Content MD5sum

e3bef1b1681ac7a8a6e6639707052505

File Size

439 MB

Submitted File Name

Multiome_ATAC_X042_G1_L001_P043_S19_L006_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

59265232

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8971IRDZ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples