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IGVFFI5528FTRW

released
validated
File Set
IGVFDS7143XIKJ(quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder)
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
md5sum
12b35847abab5613e18da20f4dab430e
Content MD5sum
7f0c4fe3ddf46285508c42ca8e9abfcd
File Size
345 MB
Submitted File Name
"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/ASD_nadav/counts/TSTFI27338297RNA_rep2_R2.fastq.gz"

Sequencing Details

Sequencing Platform
Illumina NextSeq 500
Sequencing Run
1
Sequencing Kit
NextSeq 500 Mid Output v2 Kit
Illumina Read Type
R2
Average Read Length
10
Read Count
18236600

Files Derived From This File

3 items
tsv
reporter experiment
reporter experiment
Nadav Ahituv, UCSF
553 KB
validated
tsv
reporter genomic variant effects
reporter genomic variant effects
Nadav Ahituv, UCSF
121 KB
validated
tsv
reporter experiment
reporter experiment
Nadav Ahituv, UCSF
543 KB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI8327DUVA, IGVFFI5528FTRW, IGVFFI0852UCYT
Nadav Ahituv, UCSF
1.3 KB
validated

Attribution

Award
HG011966
Principal Investigator(s)
Contact P.I.
Jay Shendure
Lab
Nadav Ahituv, UCSF