IGVFFI5525ABDX

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1106JKWP(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X045_G4_P045_L001_R1

md5sum

ed289195f5e38bee60c3e2486a679be5

Content MD5sum

57e697c3912aa9687fd4a57bacddac1f

File Size

6.6 GB

Submitted File Name

Multiome_ATAC_X045_G4_L004_P045_S8_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

204532791

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8872IRZA

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples