IGVFFI5523CTAF

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI5523CTAF/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI5523CTAF",
    "assay_titles": [
        "Parse SPLiT-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012077/",
        "component": "mapping"
    },
    "content_md5sum": "37eb839e48c4b017cafbdc3c18514488",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2023-08-26T00:37:10.511959+00:00",
    "externally_hosted": false,
    "file_format": "fastq",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS9522BMQK/",
        "accession": "IGVFDS9522BMQK",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM8722YQAW/",
                "accession": "IGVFSM8722YQAW",
                "classifications": [
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "status": "released",
                        "term_name": "left cerebral cortex"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples",
                "taxa": "Mus musculus",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "Parse SPLiT-seq"
    },
    "file_size": 11764063367,
    "flowcell_id": "AAC2JNKHV",
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI5523CTAF/@@download/IGVFFI5523CTAF.fastq.gz",
    "illumina_read_type": "R1",
    "input_file_for": [
        "/matrix-files/IGVFFI8842WHFD/",
        "/matrix-files/IGVFFI4028UJSM/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ali-mortazavi/",
        "title": "Ali Mortazavi, UCI"
    },
    "lane": 1,
    "loci_list_for": [],
    "maximum_read_length": 140,
    "md5sum": "2d4a0beb2e31d5981ebc56748297395b",
    "mean_read_length": 140,
    "minimum_read_length": 140,
    "read_count": 146758917,
    "release_timestamp": "2024-05-08T23:38:41.981943+00:00",
    "s3_uri": "s3://igvf-files/2023/08/26/8e5c05f5-df92-461c-9194-aaf72b46ea69/IGVFFI5523CTAF.fastq.gz",
    "schema_version": "14",
    "seqspecs": [
        "/configuration-files/IGVFFI9335YMXJ/"
    ],
    "sequencing_kit": "NextSeq 1000/2000 P3 Reagent Kit",
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0010963/",
        "status": "released",
        "term_name": "Illumina NextSeq 2000"
    },
    "sequencing_run": 2,
    "status": "released",
    "submitted_by": {
        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
        "title": "Diane Trout"
    },
    "submitted_file_name": "igvf_b01/next2/igvf_b01_B07_E_next_N2_R1.fastq.gz",
    "summary": "R1 reads from sequencing run 2",
    "upload_status": "validated",
    "uuid": "8e5c05f5-df92-461c-9194-aaf72b46ea69"
}