IGVFFI5515DHUC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6183YJRV(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP001_G4_P051_L008_I1

md5sum

713c9b25f94668d9d027f4c1093c4639

Content MD5sum

edf7f4de31d692e2d37bbba623091440

File Size

438 MB

Submitted File Name

Multiome_ATAC_RP001_G4_L004_P051_S24_L008_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

67195906

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7329LEXT

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 10 more samples